The Seed Biology Place

Plant Physiology 155: 1851-1870 (2011)

**Regulation of seed germination in the close Arabidopsis relative Lepidium sativum: A global tissue specific transcript analysis**

Karl Morris, Ada Linkies, Kerstin Müller, Krystyna Oracz, Xiaofeng Wang, James R. Lynn, Gerhard Leubner-Metzger, William E. Finch-Savage

School of Life Sciences, Warwick University, Wellesbourne, Warwick CV35 9EF, UK (Ka.M., J.R.L., W.E.F.-S.)
University of Freiburg, Faculty of Biology, Institute for Biology II, Botany / Plant Physiology, Schänzlestr. 1, D-79104 Freiburg, Germany (A.L., Ke.M., K.O., G.L.-M.)
College of Life Sciences, South China Agricultural University, Guangzhou 510642, China (X.W.)
Department of Biological Sciences, Simon Fraser University, 8888 University Drive, Burnaby BC V5A 1S6, Canada (Ke.M.)

Received November 23, 2010; accepted February 7, 2011; published February 14, 2011
DOI 10.1104/pp.110.169706

	CAP				RAD
Tags	8h	18h	30h	96h	8h	18h	30h	96h
Dormancy related	0	5	3	2	7	3	1	6
Germination related	1	0	0	1	2	1	1	0
ABA	2	3	4	1	4	3	0	5
Auxin	2	5	5	0	8	5	3	2
Brassinosteroid	1	0	1	1	2	1	0	1
Cytokinin	2	1	0	0	2	0	1	0
Ethylene	0	0	0	0	5	1	0	0
Gibberellin	1	1	2	0	1	0	0	2
Jasmonic acid	0	3	0	2	2	0	0	2
Seed storage proteins/Late Embryogenesis Abundant	0	1	1	4	2	1	1	1
Inhibition of protein degradation	0	1	1	1	0	0	0	0
Protein degradation	5	8	8	11	14	3	3	5
Heat Shock	1	4	3	6	5	1	1	5
Cell-wallmodification	1	8	4	7	7	7	3	10
Cell cycle related	1	4	7	1	5	1	5	2
Cytoskeleton	3	2	4	4	6	3	0	5
Translation associated	2	5	2	3	5	4	3	2
DNA repair	1	0	3	1	6	2	3	3
Respiration	0	0	0	1	0	0	0	1
Electron Transport	0	0	0	0	0	0	0	1
Pentose phosphate pathway	0	0	0	0	0	0	0	0
Glycolysis and gluconeogenesis	1	1	4	1	0	0	0	5
Krebs cycle	1	0	0	0	2	0	0	0
Beta oxidation	0	0	0	0	0	0	0	0
Stress	6	16	7	8	11	8	5	13
Photosynthesis/chloroplast related	12	27	23	25	45	19	9	31
Unannotated	0	2	0	2	0	0	0	1
Unclassified	111	201	203	239	372	166	106	219
Total genes in lists	154	298	285	321	513	229	145	322
Total genes classified above	43	97	82	82	141	63	39	103
Percentage classified	27.9	32.6	28.8	25.6	27.5	27.5	26.9	32.0

Supplemental Table S5. The numbers of genes, with expression on +ABA-arrays that is unique to each tissue/time combination, classified in functional categories of the GO-based seed-specific TAGGIT workflow (Carrera et al., 2007).

Article in PDF format (2.0 MB)
Supplemental Data File (3.1 MB)

Abstract

Figure 1         Figure 2         Figure 3         Figure 4         Figure 5         Figure 6
Figure 7         Figure 8         Table 1         Table 2         Suppl. Fig. S1     Suppl. Fig. S2
Supplemental Tables:       S1       S4       S5             Suppl. Excel Table Files S2, S3, S6

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