The Seed Biology Place

Plant Physiology 155: 1851-1870 (2011)

**Regulation of seed germination in the close Arabidopsis relative Lepidium sativum: A global tissue specific transcript analysis**

Karl Morris, Ada Linkies, Kerstin Müller, Krystyna Oracz, Xiaofeng Wang, James R. Lynn, Gerhard Leubner-Metzger, William E. Finch-Savage

School of Life Sciences, Warwick University, Wellesbourne, Warwick CV35 9EF, UK (Ka.M., J.R.L., W.E.F.-S.)
University of Freiburg, Faculty of Biology, Institute for Biology II, Botany / Plant Physiology, Schänzlestr. 1, D-79104 Freiburg, Germany (A.L., Ke.M., K.O., G.L.-M.)
College of Life Sciences, South China Agricultural University, Guangzhou 510642, China (X.W.)
Department of Biological Sciences, Simon Fraser University, 8888 University Drive, Burnaby BC V5A 1S6, Canada (Ke.M.)

Received November 23, 2010; accepted February 7, 2011; published February 14, 2011
DOI 10.1104/pp.110.169706

	RAD				CAP
Tags	8	18	30	96	8	18	30	96
Dormancy related	1	7	6	13	15	20	26	25
Germination related	2	3	3	2	0	0	2	3
ABA	10	16	22	26	8	6	11	12
Auxin	14	14	14	27	10	13	16	12
Brassinosteroid	0	0	1	1	2	3	3	2
Cytokinin	6	3	2	6	1	1	2	2
Ethylene	6	7	7	11	2	5	10	8
Gibberellin	6	5	5	5	2	5	3	3
Jasmonic acid	2	6	3	5	0	1	0	1
Seed storage proteins/Late Embryogenesis Abundant	1	4	4	7	6	10	12	10
Inhibition of protein degradation	1	1	1	1	0	1	0	0
Protein degradation	13	19	24	37	18	22	28	35
Heat Shock	2	5	6	6	7	10	14	17
Cell-wall modification	19	18	15	24	12	18	19	22
Cell cycle related	7	1	9	7	6	14	14	22
Cytoskeleton	6	5	8	6	8	8	14	13
Translation associated	4	1	3	7	63	86	111	137
DNA repair	1	2	3	6	2	4	7	5
Respiration	0	0	0	0	0	1	1	3
Electron Transport	1	2	2	3	0	0	1	2
Pentose phosphate pathway	2	2	4	3	0	0	0	0
Glycolysis and gluconeogenesis	6	9	10	8	0	0	1	4
Krebs cycle	2	3	4	4	1	0	1	1
Beta oxidation	2	2	4	4	0	0	0	0
Stress	36	55	53	53	17	24	38	45
Photosynthesis/chloroplast related	48	60	73	134	34	44	69	121
Unannotated	1	2	1	4	2	2	4	3
Unclassified	346	484	496	828	339	438	593	718
Total genes in lists	545	736	783	1238	555	736	1000	1226
Total genes classified above	199	252	287	410	216	298	407	508
Percentage classified	36.5	34.2	36.7	33.1	38.9	40.5	40.7	41.4

Table 2. The numbers of genes classified in functional categories of the GO-based seed-specific TAGGIT workflow (Carrera et al., 2007) that were up-regulated in the tissue shown at each time point for the +ABA-arrays.

Article in PDF format (2.0 MB)
Supplemental Data File (3.1 MB)

Abstract

Figure 1         Figure 2         Figure 3         Figure 4         Figure 5         Figure 6
Figure 7         Figure 8         Table 1         Table 2         Suppl. Fig. S1     Suppl. Fig. S2
Supplemental Tables:       S1       S4       S5             Suppl. Excel Table Files S2, S3, S6

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